Table 1

Small rCNAs with candidate genes

rCNA IDLocusFL frequencytFL frequencytFL:FL ratioNo. of genesInteresting genes
6691p36.33+0.0250.0763.00856TNFRSF14
1221p36.33-p36.31−0.2470.2410.97251TNFRSF14*, PRDM16
11p36.32− (×2)0.0250.0381.50416PRDM16, TP73
1241p36.11-p35.3−0.0450.0511.11440ARID1A
6741p22.3+0.0100.0252.5067BCL10
10191p22.3+ (×2)0.0050.0255.0135BCL10
1251p13.1−0.0300.0381.2537CD58*
7142p16.3-p14+0.0300.0511.67172REL, BCL11A
6932p16.1-p15+0.1060.1901.79013REL, BCL11A
10302p16.1-p15+ (×2)0.0860.1141.3278REL, BCL11A
1632q11.2−0.0150.0382.5061AFF3
7183q27.3-q28+0.0200.1145.6395BCL6
2755q33.3−0.0450.0511.1141EBF1*
3076p25.3−0.0200.1145.6399IRF4
3086p21.33-p21.32−0.0300.0892.92452HLA-C, HLA-B
7696p21.2-p21.1+0.0300.0130.41878CCND3
3426q16.3-q22.33−0.0350.0381.074127PRDM1
3126q21−0.0200.0512.50610PRDM1
3406q23.2-q25.1−0.0560.1011.823102TNFAIP3, PERP
3046q23.3-q24.1−0.0810.1271.56619TNFAIP3, PERP
376q23.3− (×2)0.0560.1011.8231TNFAIP3
7877p22.3-p21.3+0.0250.0763.00889CARD11, RNF216
11018q24.12-q24.3+ (×2)0.0300.0381.253109MYC
8188q24.13-q24.3+0.1060.1141.074174MYC
4029p21.3−0.0510.1773.5095CDKN2A, CDKN2B
599p21.3− (×2)0.0300.1143.7594CDKN2A, CDKN2B
4079q34.3−0.0250.0000.0003EHMT1
42210q24.1−0.0400.1142.8207LCOR*
44711q14.1-q14.2−0.0150.0251.6715EED
114612p11.22-q13.11+ (×2)0.0250.0130.50149ARID2, DDX11, ALG10, KIF21A
86612q12-q13.12+0.0200.0381.88047ARID2, HDAC7, RPAP3
114512q13.2-q21.1+ (×2)0.0400.0250.627127MDM2,TBK1, CDK4, STAT6
86712q13.3+0.0250.0251.00318STAT6
112512q15+ (×2)0.0200.0633.13322MDM2
86412q15+0.0300.0250.83517MDM2
49613q12.3-q13.2−0.0150.0513.34217
54315q21.1−0.0400.1142.8204B2M*
56416p13.3−0.0250.0512.0058CREBBP*
56516p13.13−0.0150.0513.3424CIITA*
58517p13.3-p13.1−0.0710.1522.148160TP53
96618q21.2-q21.33+0.0250.0381.50443MALT1, BCL2
60619p13.3-p13.2−0.0450.1142.50623CD70*
  • * Confirmed by PCR.