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HEMOSTASIS, THROMBOSIS, AND VASCULAR BIOLOGY
From the Department of Biology and Genetics for Medical
Sciences, University of Milan; Institute of Veterinary Physiology and
Biochemistry, University of Milan, Italy; Angelo Bianchi Bonomi
Hemophilia and Thrombosis Center and Fondazione Luigi Villa, Department
of Internal Medicine, University of Milan, Italy, and IRCCS Maggiore
Hospital, Milan, Italy; and Oxford Haemophilia Centre, Churchill
Hospital, Headington, Oxford, UK.
Congenital afibrinogenemia is a rare autosomal recessive disorder
characterized by the complete absence of plasma fibrinogen and by a
bleeding tendency ranging from mild to moderately severe. Beside a
deletion of the almost entire A Fibrinogen is a major plasma glycoprotein that is
central to the blood clotting process1 and is also a
primary participant in the acute phase response to injury and
stress.2 It is synthesized in the liver and is secreted as
a completely assembled hexamer of 340 kd, composed of 3 pairs of
nonidentical but homologous polypeptide chains (A Congenital afibrinogenemia (MIM 202400) is a rare autosomal recessive
disorder described for the first time in 19205 and
characterized by unmeasurable clottable fibrinogen and extremely low
antigen levels in patient plasma.6 From the study of more than 150 cases reported thus far, a pattern of clinical symptoms can be
compiled for this disorder.7,8 Diagnosis is often made at
birth because of umbilical cord bleeding. Joint and mucosal bleeding,
such as epistaxis, are also common symptoms, whereas gastrointestinal
bleeding is less frequent and central nervous system bleeding is rare.
Fresh frozen plasma or cryoprecipitate were widely used in the past to
control bleeding symptoms, but fibrinogen concentrates that underwent
viral inactivation are currently the best option for replacement
therapy.7,8
Among fibrinogen congenital abnormalities, afibrinogenemia is the
least characterized from a molecular point of view. So far, the
molecular defects have been identified and the pathogenetic mechanism
elucidated only for 3 afibrinogenemic kindreds. A homozygous 11- kilobase (kb) deletion of almost the entire A In this paper, a Pakistani afibrinogenemic patient was studied. The
proband had unmeasurable plasma levels of clottable and immunoreactive
fibrinogen. Sequencing of fibrinogen genes, including exon-intron
boundaries and promoter regions, allowed us to identify a homozygous
G Coagulation tests
DNA extraction
Sequence analysis DNA sequencing was performed on both strands either directly on purified polymerase chain reaction (PCR) products or on plasmids, using the Taq dye-deoxy terminator method and an automated 310 DNA sequencer (PE-Biosystems, Foster City, CA). All primers used for sequencing were designed on the basis of known sequences of the fibrinogen genes and intergenic regions (GenBank, accession numbers: M64982, M64983, M10014, U36478, and AF229198) and were purchased from Life Technologies (Inchinnan, Paisley, UK). Primer sequences can be provided on request. Factura and Sequence Navigator software packages (PE-Biosystems) were used for mutation detection.Construction of expression vectors Mammalian expression vector pTARGET (Promega, Milan, Italy) was used to transcribe either the wild-type or the mutant mRNA. A genomic DNA fragment spanning from exon 1 to intron 4 of the human fibrinogen -chain gene was amplified using the primer couple FGG-Ex1-F
(5'-ATGAGTTGGTCCTTGCACAA-3') and FGG-In4-R
(5'-ACTAAATCAGTCTTGCAGAGC-3'). PCRs were carried out in a 50 µL
reaction mixture containing 100 ng of genomic DNA (either from the
proband or a healthy control individual), 2.5 units Taq DNA
Polymerase (Sigma, St Louis, MO), 1× PCR buffer (10 mmol/L Tris-HCl pH
8.3, 50 mmol/L KCl, 1.5 mmol/L MgCl2 and 0.001% gelatin),
0.2 mmol/L dNTPs, and 0.4 µmol/L of each primer, in a PTC-100 thermal
cycler (MJ-Research, Watertown, MA). Samples were subjected to 35 cycles of denaturation at 94°C for 30 seconds, annealing at 56°C
for 30 seconds, and elongation at 72°C for 45 seconds, preceded by 3 minutes denaturation at 94°C and followed by 10 minutes elongation at
72°C. PCR products were inserted into pTARGET vector using the
pTARGET Mammalian Expression T-Vector System kit (Promega). The 2 recombinant plasmids, hereafter referred to as pTarget- (Ex1-In4)-wt
and pTarget- (Ex1-In4)-mut, were checked by sequencing.
Cell cultures, tranfections, and RNA extraction Human cervix carcinoma HeLa cells were cultured in Dulbecco's modified Eagle's Medium containing 10% calf serum, antibiotics (100 IU/mL penicillin and 100 µg/mL streptomycin) and glutamine (1%). Cells were grown at 37°C in a humidified atmosphere of 5% CO2 and 95% air, according to standard procedures. Transfections were performed by the calcium phosphate technique, essentially as described by Wigler et al.12 HeLa cells were plated at a density of 2 × 106 per 10-cm diameter dish, and 24 hours later, tranfections were carried out, applying to the semiconfluent cells CaPO4-DNA precipitate containing 20 µg of either pTarget- (Ex1-In4)-wt or pTarget- (Ex1-In4)-mut plasmid. Cells were washed twice with phosphate-buffered saline (PBS)
16 hours after transfection, and the medium replaced with a fresh one.
Forty-eight hours later, this medium was removed and total RNA was
extracted from harvested HeLa cells, using the RNAWIZ kit (Ambion,
Austin, TX) according to the manufacturer's instructions. All
procedures were carried out at 0°C or 4°C using RNAse-free reagents
and plasticware.
Analysis of splice-site mutation First strand cDNA synthesis, starting from 1 µg of total RNA previously submitted to a DNAseI (Ambion) treatment, was carried out using random nonamers and the Enhanced Avian RT-PCR kit (Sigma). Of a total of 20 µL, 5 µL were used as template to amplify wild-type and mutant transcripts, using the primer couple FGG-Ex1-F and FGG-Ex3-R (5'-GTCTTCCAAAGACTGTAGATCC-3'). PCRs were carried out in 25 µL of a mixture, containing 1.5 units AccuTaq Polymerase (Sigma), 1× PCR buffer (50 mmol/L Tris-HCl, 15 mmol/L ammonium sulfate pH 9.3, 2.5 mmol/L MgCl2, and 0.1% Tween 20), 0.2 mmol/L dNTPs, and 0.4 µmol/L of each primer. The thermal profile consisted of 94°C for 3 minutes, followed by 35 cycles of 30 seconds at 94°C, 10 seconds at 58°C, and 30 seconds at 68°C. A final extension of 2 minutes at 68°C was performed at the end of PCR cycles.
Patient data The proband is a 3-year-old Pakistani child born from a consanguineous marriage (Figure 1A; the maternal great-grandmother and the paternal grandfather were related but the degree of relationship is unknown). No bleeding complication occurred at birth, but after 3 weeks, the child presented with intracranial bleeding (subdural hematoma and ventricular hemorrhage) and afibrinogenemia was diagnosed. The child recovered from the hemorrhage after 3-month treatment with cryoprecipitate, but 6 months later, a new intracranial bleed (parenchimal hemorrhage with extension to the subdural space and ventricle) occurred and had to be surgically evacuated, administering fibrinogen concentrate. Since this episode, treatment with fibrinogen concentrate has been continued prophylactically and no new bleeding symptoms have been observed. The proband's parents and sisters are asymptomatic. Plasma fibrinogen levels were unmeasurable by clottable and immunologic assays in the proband at the time of the first diagnosis. The parents had reduced fibrinogen levels in plasma (Figure 1A).
Sequence analysis The entire coding region, including exon-intron boundaries and approximately 500 base pairs (bp) of the promoter region of each fibrinogen gene of the proband was sequenced. Sequence analysis identified an homozygous G A transition in intron 1 of the fibrinogen -chain at position 1881 (numbered according to GenBank accession number M10014) (Figure 1B). This nucleotide substitution (hereafter referred to as 1876 +5G A) was located at the fifth position of intron 1 and might affect the correct splicing of -chain mRNA. The
proband's parents were heterozygous for this mutation (Figure 1B). Two
hundred aploid genomes from unrelated individuals belonging to 2 populations with different genetic background (100 from a Northern
Italian and 100 from an Iranian control population) were also analyzed
by dot blot hybridization with allele-specific oligonucleotide probes.
The 1876 +5G A mutation was absent in all of them (data not shown).
Figure 2 shows the predicted effect of
the 1876 +5G
As shown in Table 1, by sequencing the 3 fibrinogen genes, we also detected a few trivial differences from the
reported sequences (GenBank, accession numbers: M64982, M64983, and
M10014). Four variations had already been reported to be common in a
control population.13 Two new nucleotide differences were
found within introns of the A
Production of A mutation determines the
retention of intron 1 into the mature mRNA, mutant -chain mRNA was transiently produced in HeLa cells. For this purpose, we prepared 2 expression vectors, pTarget- (Ex1-In4)-wt and
pTarget- (Ex1-In4)-mut, by cloning a PCR-amplified genomic DNA
fragment of the fibrinogen -chain gene, as described in "Materials
and methods." As shown in Figure 3A,
this fragment spanned from nucleotide position 1799, corresponding to
the first position of the ATG translation start codon, to nucleotide
position 2646, corresponding to the 5' part of intron 4 (numbering
according to GenBank accession number M10014). Orientation of the
inserts and absence of newly unanticipated changes due to PCR errors in
the cloned regions were checked by sequencing. Both
pTarget- (Ex1-In4)-wt and pTarget- (Ex1-In4)-mut plasmids were
independently transfected in HeLa cells and total RNA was extracted
after 48 hours. Reverse transcriptase-polymerase chain reaction
(RT-PCR) assays on purified DNAseI-treated RNA were performed using the
exonic primers FGG-Ex1-F (nucleotide position 1799-1818) and FGG-Ex3-R
(nucleotide position 2296-2275) (Figure 3A). RT-PCR performed on RNA
extracted from pTarget- (Ex1-In4)-wt-transfected HeLa cells allowed
us to detect the expected 213-bp long fragment (constituted by 78-bp of
exon 1, 45-bp corresponding to the entire exon 2, and 90-bp of exon 3)
(Figure 3B, lane 2). The same amplification, carried out using RNA
extracted from pTarget- (Ex1-In4)-mut-transfected HeLa cells as
template, resulted in a longer product of about 300 bp, as evaluated by
gel electrophoresis (Figure 3B, lane 1). The greater length of this
mutant transcript was compatible with the retention into the mature
mRNA of the 96-bp long intron 1. This hypothesis was confirmed by
direct sequencing of the PCR product, which spanned along 309 bp and
contained the complete intron 1 sequence. These data demonstrate that
1876 +5G A mutation alters the intron 1 splice-donor site and results
in an abnormal -mRNA.
Congenital quantitative deficiencies have been identified for
different proteins of the coagulation and anticoagulation systems, including factor V,14 factor VII,15 factor
VIII,16 protein C,17 protein
S,18 and antithrombin III.19 In these cases, probands' DNA and/or RNA analysis allowed the identification of several genetic abnormalities responsible for reduced plasma levels of
the corresponding protein. Several mutations, such as deletions, missense mutations, nonsense mutations, and splice-site abnormalities have been described to be associated with protein deficiency. So far,
inherited afibrinogenemia has been associated only with a gross
homozygous deletion of the almost the entire A In this study, by direct sequence analysis of the 3 fibrinogen genes in
a Pakistani afibrinogenemic patient, we identified a novel point
mutation, the first localized in the Because the 1876 +5G
Our Pakistani afibrinogenemic patient had unmeasurable levels of plasma
fibrinogen, thus preventing a protein investigation and suggesting a
study at mRNA level. Because fibrinogen expression is confined mainly
to the liver23 and we had no access to liver biopsy
specimens of the Pakistani patient, we adopted an ex vivo approach to
demonstrate the aberrant splicing of fibrinogen mutant In summary, we identified the first truncation of the fibrinogen
Very recently, point mutations in the
A
We thank family members for their participation in this study.
Submitted May 2, 2000; accepted June 17, 2000.
Supported by the Ministero dell'Università e della Ricerca Scientifica e Tecnologica (MURST 60%), by IRCCS Maggiore Hospital, Milan, Italy, and by Progetto Giovani 1998.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
Reprints: Maria Luisa Tenchini, Dipartimento di Biologia e Genetica per le Scienze mediche, via Viotti, 3/5-20133 Milano, Italy; e-mail: marialuisa.tenchini{at}unimi.it.
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© 2000 by The American Society of Hematology.
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C. Dall'Osso, I. Guella, S. Duga, N. Locatelli, E. M. Paraboschi, M. Spreafico, A. Afrasiabi, C. Pechlaner, F. Peyvandi, M. L. Tenchini, et al. Molecular characterization of three novel splicing mutations causing factor V deficiency and analysis of the F5 gene splicing pattern Haematologica, October 1, 2008; 93(10): 1505 - 1513. [Abstract] [Full Text] [PDF] |
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S. Spena, M. L. Tenchini, and E. Buratti Cryptic splice site usage in exon 7 of the human fibrinogen B{beta}-chain gene is regulated by a naturally silent SF2/ASF binding site within this exon RNA, June 1, 2006; 12(6): 948 - 958. [Abstract] [Full Text] [PDF] |
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P. M. Mannucci, S. Duga, and F. Peyvandi Recessively inherited coagulation disorders Blood, September 1, 2004; 104(5): 1243 - 1252. [Abstract] [Full Text] [PDF] |
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C. Attanasio, A. David, and M. Neerman-Arbez Outcome of donor splice site mutations accounting for congenital afibrinogenemia reflects order of intron removal in the fibrinogen alpha gene (FGA) Blood, March 1, 2003; 101(5): 1851 - 1856. [Abstract] [Full Text] [PDF] |
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S. Spena, S. Duga, R. Asselta, M. Malcovati, F. Peyvandi, and M. L. Tenchini Congenital afibrinogenemia: first identification of splicing mutations in the fibrinogen Bbeta -chain gene causing activation of cryptic splice sites Blood, December 15, 2002; 100(13): 4478 - 4484. [Abstract] [Full Text] [PDF] |
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