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Blood, Vol. 94 No. 4 (August 15), 1999:
pp. 1183-1191
By
From the Academic Medical Centre, University of Amsterdam, Department
of Human Retrovirology, Amsterdam, The Netherlands; the Municipal
Health Service, Department of Public Health and Environment, Amsterdam,
The Netherlands; the Central Laboratory of The Netherlands Red Cross
Blood Transfusion Service, Amsterdam, The Netherlands; and
the Medical Research Council (MRC) Laboratories, Banjul, The Gambia.
Screening of antibodies to hepatitis C virus (HCV) is widely used
for monitoring the prevalence of HCV infections and to assess HCV
infectivity. Among HCV-infected individuals in the general population,
the interval between the detection of HCV RNA and the development of
HCV antibodies is usually 5 to 6 weeks, but in rare cases,
seroconversion may be prolonged up to 6 to 9 months. In this study, we
tested for the presence of HCV RNA during the antibody-undetectable
period of 19 drug-injecting HCV seroconverters to gain insight into the
antibody-negative carrier status in this population. HCV seroconversion
status was determined by testing the first and last serum samples
obtained from each subject, using third-generation antibody screening
and confirmation assays. Serial samples were tested for HCV-specific
antibodies to establish the moment of seroconversion and HCV RNA by
single reverse transcriptase-polymerase chain reaction (RT-PCR) and
branched DNA assay (bDNA) in serum. Plasma and peripheral blood
mononuclear cells (PBMCs) were independently collected and tested for
HCV RNA. HCV RNA-positivity was confirmed by Southern blot
hybridization and sequencing of serial samples. The 19 HCV
seroconverters had a mean follow-up of 5 years (range, 1 to 8 years).
Of the 19, 4 were human immunodeficiency virus (HIV)-infected before
HCV seroconversion. HCV RNA was detected in serum before seroconversion
in 12 (63.2%) of the 19 HCV seroconverters, independent of HIV status.
In 7 of these 12, the antibody-undetectable period was relatively short
(2 to 10 months). The other 5, who were all HIV-negative before HCV
seroconversion, had intermittent low levels of HCV RNA before
seroconversion for a period of more than 12 months, with a mean of 40.8 months (range, 13 to 94 months). In all 5 individuals, independent
repeats of the experiments confirmed the presence of HCV RNA in serum,
and in 3 of these individuals, HCV-positivity was confirmed in
independently collected plasma and PBMC samples. Low levels of HCV RNA
may be present during prolonged antibody-undetectable periods before
seroconversion in a number of injecting drug users. Independent of HIV
status, their immune system appears to be unable to respond to these
low HCV RNA levels and was sometimes only activated after reinfections with distinct HCV genotypes. These results indicate that primary HCV
infection may not always elicit the rapid emergence of HCV antibodies
and suggests that persistent low levels of HCV RNA (regardless of the
genotype) may not elicit at all or delay antibody responses for
prolonged periods of time.
HEPATITIS C VIRUS (HCV), an RNA virus
with marked genetic heterogeneity, is the etiological agent of most
cases of posttransfusion and community-acquired non-A and non-B
hepatitis.1 This blood-borne virus is widespread among
injecting drug users (IDUs),2-4 and HCV infections may
cause a benign, asymptomatic disorder with an indolent
course5 but can eventually cause progressive liver disease,
cirrhosis, and liver cancer.6-8 The illness has a complex
course, with RNA levels that are often transient.9-12 Antibodies to HCV are detected by immunoassays, and their presence is
closely related with infectivity, especially in blood
donors,13-15 hemodialysis patients,16
hemophiliacs,17 and patients with chronic
HCV.18,19 Current immunoassays detect most individuals with
HCV infections, and HCV RNA has been detected during short antibody-undetectable periods (the window phase from infection to the
development of antibodies to HCV) in persons infected by blood
transfusions20,21 or surgical procedures22 and
in experimentally infected primates.23,24 However, up to
half of immunosuppressed patients, such as organ transplant patients,
fail to generate antibodies to HCV,25 and IDUs also have a
high proportion of delayed antibody responses.2 In 2 other
studies, HCV RNA was significantly more detectable in whole blood than
in plasma samples among antibody-negative individuals, indicating that
a proportion of HCV RNA in peripheral blood might be
missed.26,27 Unexpected clinical profiles, with HCV RNA
present for a period of 5 years without antibodies to HCV, were
observed in experimentally inoculated chimpanzees.28
Spontaneous loss of antibodies to HCV, or seroreversion, among
immunocompetent individuals has recently been described,29 and we have observed a complete loss of antibodies to HCV in
individuals both with and without reinfection.30
Therefore, the present study was performed to identify and
confirm the presence of HCV RNA in serum and other blood compartments
before the moment of seroconversion in the high-risk group of IDUs.
Patients and sample collection.
The study population consists of IDUs participating in the Amsterdam
Cohort Studies on human immunodeficiency virus (HIV) and acquired
immunodeficiency syndrome (AIDS) among IDUs. From a cohort started in
December 1985,31 we selected drug users in March 1996 who
were observed for at least 3 years and had at least 7 visits (n = 358).
The 19 HCV seroconverters (10 women and 9 men; mean age, 38 years) and
the cohort of 358 participants (148 women and 210 men; mean age, 42 years) from which they are recruited are representative of the original
cohort and are 99% whites. A previous study3 identified
risk factors for a prevalent HCV infection, which included a history of
injecting drug use and duration and frequency of injecting drug use.
Because our aim was to study incident cases of HCV infection, we
therefore selected in March 1996 only drug users with a history of
injecting drug use who had sufficient follow-up (>3 years) and study
visits (>6). Because of this selection, we included in this study
mainly drug users with a relatively long career of injecting drugs, of whom 88.3% (n = 316) were found to be already infected with HCV at
intake. Among the remainder of 42 participants, 23 remained seronegative throughout the study period, whereas 19 seroconverters were identified. Their HCV seroconversion status was established by
screening the first and the last serum samples for HCV antibodies, and
serial samples of the seroconverters were then tested to establish the
approximate seroconversion point. The date of HCV seroconversion was
determined by calculating the midpoint between the last seronegative and first seropositive sample. Nineteen HCV seroconverters, of which 1 reseroconverted, were identified and studied longitudinally for the
presence of HCV RNA. Serum samples were initially used to determine the
presence of HCV RNA before seroconversion. The findings of HCV
RNA-positive samples before HCV seroconversion were confirmed by
detecting HCV RNA in serum and peripheral blood mononuclear cells
(PBMCs) or plasma sampled at the same time point. In addition, the
branched DNA (bDNA) assay was performed on the same serial serum
samples before and after HCV seroconversion. Serum and EDTA-blood
samples of the 19 HCV seroconverters were drawn at different Municipal
Health stations in Amsterdam. For final handling and storage, all serum
samples were sent to the Academic Medical Centre, whereas all
EDTA-blood samples were sent to the Central Laboratory of The
Netherlands Red Cross Blood Transfusion Service. Serum samples were
stored initially at +4°C, centrifuged, aliquoted, frozen at
Serological tests.
Samples were tested for the presence of antibodies to HCV by the
third-generation enzyme immunoassay (EIA 3.0; Abbott Laboratories, Chicago, IL). All positive EIA 3.0 assays were confirmed by the third-generation strip immunoblot assay (SIA, RIBA; Chiron Corp, Emeryville, CA). Antibodies to HIV-1 were determined with commercial EIA (Abbott Laboratories) and confirmed by Western blot (Diagnostic Biotechnology, Herent, Belgium). Individuals who remained HIV-negative were screened on all consecutive samples by EIA. All serological assays
were performed according to the manufacturer's manual.
Detection of HCV RNA by reverse transcriptase-polymerase chain
reaction (RT-PCR) in serum and plasma samples.
HCV RNA was isolated from a 100-µL serum or plasma sample, according
to Boom et al,32 and was used immediately in single RT-PCR
experiments, using primers located in the 5' noncoding region, or
stored at Isolation and detection of HCV RNA by RT-PCR in PBMCs.
HCV RNA was isolated from 100 µL PBMCs containing approximately
105 cells/mL using Total RNA Isolation Reagent (TRIzol
Reagent; Life Technology), which is designed for the isolation of total
RNA from cells and tissue, according to the manufacturer's manual. HCV
RNA was detected in PBMCs with nested PCR, processing one tenth of the
initial RT-PCR products under the same conditions as in the single PCR,
but with 25 cycles using sense primer (nt 74-91)
5'-AGCGCCTAGCCATGGCGT-3' and antisense primer (nt 243-260) 5'-TACCACAAGGCCTTTCGC-3', which were extended at the
5'-end with the HCV RNA quantification.
The HCV RNA load in serum was determined longitudinally by the bDNA
signal amplification assay 2.0 (Quantiplex HCV RNA; Chiron Corp)
according to the manufacturer's manual. All samples were tested in
duplicate, and the mean value of the duplicate tests was used for data
analysis. Viral load, expressed as HCV RNA copies per milliliter, was
determined by comparison with an external standard curve, having a
quantitation limit of 2.0 × 105 HCV RNA copies/mL.
Specificity and confirmation of HCV PCR products.
The specificity of the PCR products was confirmed by using a
5'-digoxigenine labeled probe33 (nt 264-291),
5'-TTGGGTCGCGAAAGGCCTTGTGGTACTG-3', in high stringency
hybridizations, according to the manual (Boehringer Mannheim GmbH,
Mannheim, Germany) and by genotyping. The genotypes were
determined either using the HCV LiPa protocol (Line Probe Assay
[LiPa]; Innogenetics, Ghent, Belgium),34 according to the
manual, or by direct-sequencing the products obtained by nested PCR
processing one tenth of the initial RT-PCR products. Nested PCR
(encompassing the same region as used in the HCV LiPa protocol) was
performed under the same conditions as the single PCR, but for 25 cycles, using sense primer (nt 74-91)
5'-AGCGCCTAGCCATGGCGT-3' and antisense primer (nt 243-260)
5'-TACCACAAGGCCTTTCGC-3', which were extended at the
5'-end with the Computer sequence analysis.
The PCR products were directly sequenced with an ABI Automated
Sequencer model 373A (Applied Biosystems, Columbia, MD) using the 1.2.0 software. The direct sequences were assembled by the Sequence Navigator program (ABI) and were further optimized
manually. P-distances and consensus sequences of part of the
5'UTR (based on at least 10 sequences of the 6 major genotypes
as found in Genbank) were calculated with MEGA.35
Phylogenetic trees were computed using the neighbour-joining
algorithm.36 The resulting tree was assessed by the
bootstrap method37 based on 500 replicates.
Determination of HCV seroconverters.
Testing of the first and the last samples drawn from 358 IDUs showed
that 316 (88.3%) were positive for antibodies to HCV, 23 (6.4%) were
negative for antibodies to HCV, and 19 (5.3%) seroconverted for HCV
during the follow-up period. One of 19 HCV seroconverters seroreverted
during follow-up, as described earlier.30 Antibodies to HCV
disappeared completely after the first 55 months, although HCV RNA was
intermittently detectable in serum during that period of 45 months.
Subsequently, a new seroconversion occurred at 98 months
(Fig 1).
Confirmation by hybridization of the initial HCV RNA-positive serum
samples in 19 HCV seroconverters.
To confirm all PCR products initially detected in serum samples of the
19 HCV seroconverters after UV illumination, we performed high-stringency Southern blot hybridizations using a
digoxigenine-labeled probe that disclosed the specificity of the
RT-PCR. The RT-PCR rendered good duplicates unless the detection limit
of the system was reached (Fig 2). As a
control panel, we included the first serum samples of 6 HCV
seronegative subjects who were seronegative with EIA 3.0 at both first
and last sample over a mean period of 5 years. RT-PCR and Southern blot
hybridization experiments performed on this control panel showed that
no detectable HCV RNA was present in any of the first samples (results
not shown).
Presence of HCV RNA in different blood compartments among
HIV-negative subjects with prolonged antibody-negative periods.
RT-PCR was used to analyze serial blood samples for the presence of HCV
RNA before HCV seroconversion in different blood compartments drawn
from the 5 HIV-negative subjects (0073, 0146, 1083, 1085, and 3059),
when available. In 3 of these 5 individuals (0073, 1083, and 3059), the
initial sample was HCV RNA-negative. HCV RNA, as detected by single
RT-PCR, fluctuated but was repeatedly found at low levels in serial
samplings of all 5 subjects before HCV seroconversion. On some
occasions, HCV RNA was found by the bDNA assay in serum more than 1 year before HCV seroconversion. In 3 of 5 subjects (1085, 3059, and
0146), the presence of HCV RNA in serum could be confirmed
independently in PBMCs or plasma. The antibody status and presence of
HCV RNA in these 5 subjects are summarized in
Table 1.
Determination of HCV RNA by sequencing among subjects with prolonged
antibody-negative periods in different blood compartments.
To verify all positive findings by RT-PCR in the different blood
compartments from the 5 subjects, we performed sequence analyses of
samples drawn before and after HCV seroconversion. HCV genotypes were
determined using phylogenetic trees computed by the neighbour-joining algorithm, and genotype 1 was initially found in all subjects, although
sequences were distinct at 1 or more nucleotide positions. As shown in
Table 1, HCV RNA positivity was confirmed in independently collected
plasma or PBMC samples of 3 subjects (1085, 3059, and 0146), but
exclusively serum samples were available for testing in 2 subjects
(0073 and 1083).
Detection of antibodies directed to HCV is still considered the gold
standard for identification of HCV-infected individuals. A good
correlation has been shown between antibodies to HCV and detectable HCV
RNA, as well as between HCV seronegativity and undetectable RNA, among
blood donors,13,14 hemodialysis patients,16 hemophiliacs,17 and chronic HCV patients.19
However, up to half of immunosuppressed patients, such as recipients of
renal and liver transplants, fail to generate a humoral response if infected with HCV.25 Moreover, in studies of dialysis
patients38 and on histologically verified patients with
non-A, non-B hepatitis,19 commercially available antibody
tests failed to identify a number of HCV-infected individuals. Thomas
et al2 studied the sociodemographic and behavioral
correlates of HCV infections among IDUs in Baltimore and found a high
prevalence of HCV. They also found HCV RNA in 13 (30.2%) of 43 HCV-seronegative long-term drug users.
The authors thank Lucy Phillips for editorial review, Martin McMorrow
(Chiron Diagnostics) for bDNA assays, and Wim van Est for fine artwork.
Submitted December 2, 1998; accepted April 5, 1999.
Supported by the Health Research and Development Council (28-2370) and
performed as part of the Amsterdam Cohort Studies on AIDS, a
collaboration between the Academic Medical Centre, the Central
Laboratory of the Netherlands Red Cross Blood Transfusion Service, and
the Municipal Health Service, Amsterdam, The Netherlands. Approval was
obtained from the Institutional Review Board for these studies.
Informed consent was provided according to the Declaration of Helsinki.
The publication costs of this
article were defrayed in part by
page charge payment. This article
must therefore be hereby marked
"advertisement"
in accordance with 18 U.S.C. section
1734 solely to indicate this fact.
Address reprint requests to Jaap Goudsmit, MD, PhD,
Department of Human Retrovirology, Academic Medical Centre, University
of Amsterdam Meibergdreef 15, 1105 AZ, Amsterdam, The Netherlands;
e-mail: J.Goudsmit{at}AMC.UvA.NL.
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